Protein ZmSBP29
ZmSBP29 is a protein in the SBP family.
Information
TF Name: ZmSBP29
Species: Maize
TF Family: SBP
Gene Name(Synonym): SBP29
Uniprot ID: B6TMJ5
Subgenome: 1

Protein ZmSBP29

ZmSBP29 is a protein in the SBP family.

Overview of domains present in v5 transcripts
PF03110
Zm00001eb322280_T001
Zm00001eb322280_T003

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d021573DAPseq no logo sequence fimo position
Zm00001d021573DAPseq no logo sequence fimo position
Zm00001d021573ChIPseq no logo sequence fimo position
Zm00001d021573PChIPseq no logo sequence fimo position

Interactions where ZmSBP29 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmSBP29 is the target  
Expand


There are 132 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb322280_T001 from maize genome v5

Amino Acid Sequence
Copy to clipboard

MPDSSSSAGTGGMAPSSSAAASIAALAAAAASGDGSDDSGAANNNGALPLPLPPPHGVEDNNSPAELAGAGGTSRAVARR
VAAAGASPAAAARRGAAVNAQAAGGAGPSCQVERCSADMGVEKRYNRRHKVCDAHRKASVVLLAGLRQRFCQQCSRFHEL
SHFDDTKRSCRLRLAGHNERRRRNPAEAQDQHGGRGDPGSHHLQIR

MPDSSSSAGTGGMAPSSSAAASIAALAAAAASGDGSDDSGAANNNGALPLPLPPPHGVEDNNSPAELAGAGGTSRAVARR
VAAAGASPAAAARRGAAVNAQAAGGAGPSCQVERCSADMGVEKRYNRRHKVCDAHRKASVVLLAGLRQRFCQQCSRFHEL
SHFDDTKRSCRLRLAGHNERRRRNPAEAQDQHGGRGDPGSHHLQIR

MPDSSSSAGTGGMAPSSSAAASIAALAAAAASGDGSDDSGAANNNGALPLPLPPPHGVEDNNSPAELAGAGGTSRAVARR
VAAAGASPAAAARRGAAVNAQAAGGAGPSCQVERCSADMGVEKRYNRRHKVCDAHRKASVVLLAGLRQRFCQQCSRFHEL
SHFDDTKRSCRLRLAGHNERRRRNPAEAQDQHGGRGDPGSHHLQIR

MPDSSSSAGTGGMAPSSSAAASIAALAAAAASGDGSDDSGAANNNGALPLPLPPPHGVEDNNSPAELAGAGGTSRAVARR
VAAAGASPAAAARRGAAVNAQAAGGAGPSCQVERCSADMGVEKRYNRRHKVCDAHRKASVVLLAGLRQRFCQQCSRFHEL
SHFDDTKRSCRLRLAGHNERRRRNPAEAQDQHGGRGDPGSHHLQIR

MPDSSSSAGTGGMAPSSSAAASIAALAAAAASGDGSDDSGAANNNGALPLPLPPPHGVEDNNSPAELAGAGGTSRAVARR
VAAAGASPAAAARRGAAVNAQAAGGAGPSCQVERCSADMGVEKRYNRRHKVCDAHRKASVVLLAGLRQRFCQQCSRFHEL
SHFDDTKRSCRLRLAGHNERRRRNPAEAQDQHGGRGDPGSHHLQIR

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF03110
Hover here to show all domains

Nucleotide Sequence
Copy to clipboard
     
Expand

CAACCATGGAAATGCGCAAGTGTAT...

GRMZM2G067624_T01 from maize genome v3


Related TFome: pUT6742

Amino Acid Sequence
Copy to clipboard

MPDSSSSAGTGGMAPSSSAAASIAALAAAAASGDGSDDSGAANNNGALPLPLPPPHGVEDNNSPAELAGAGGTSRAVARR
VAAAGASPAAAARRGAAVNAQAAGGAGPSCQVERCSADMGVEKRYNRRHKVCDAHRKASVVLLAGLRQRFCQQCSR

Nucleotide Sequence
Copy to clipboard
     
Expand

ACTACTTCCTCCAATCTCCCACTCA...

GRMZM2G067624_T02 from maize genome v3

Amino Acid Sequence
Copy to clipboard

MPDSSSSAGTGGMAPSSSAAASIAALAAAAASGDGSDDSGAANNNGALPLPLPPPHGVEDNNSPAELAGAGGTSRAVARR
VAAAGASPAAAARRGAAVNAQAAGGAGPSCQVERCSADMGVEKRYNRRHKVCDAHRKASVVLLAGLRQRFCQQCSRFHEL
SHFDDTKRSCRLRLAGHNERRRRNPAEAQDQHGGRGDPGSHHLQIR

Nucleotide Sequence
Copy to clipboard
     
Expand

ACTACTTCCTCCAATCTCCCACTCA...

Zm00001d021573_T001 from maize genome v4

Amino Acid Sequence
Copy to clipboard

MPDSSSSAGTGGMAPSSSAAASIAALAAAAASGDGSDDSGAANNNGALPLPLPPPHGVEDNNSPAELAGAGGTSRAVARR
VAAAGASPAAAARRGAAVNAQAAGGAGPSCQVERCSADMGVEKRYNRRHKVCDAHRKASVVLLAGLRQRFCQQCSRFHEL
SHFDDTKRSCRLRLAGHNERRRRNPAEAQDQHGGRGDPGSHHLQIR

Nucleotide Sequence
Copy to clipboard
     
Expand

ACTACTTCCTCCAATCTCCCACTCA...

Zm00001d021573_T002 from maize genome v4

Amino Acid Sequence
Copy to clipboard

MLSLFCHAGRTHLASSPIHSPICVSSVVCARSRRLPLSCSVA

Nucleotide Sequence
Copy to clipboard
     
Expand

GGCACCGCCCGCTTTCAGTTCGTAC...

Zm00001eb322280_T002 from maize genome v5

Amino Acid Sequence
Copy to clipboard

MPDSSSSAGTGGMAPSSSAAASIAALAAAAASGDGSDDSGAANNNGALPLPLPPPHGVEDNNSPAELAGAGGTSRAVARR
AELPGGAVQRRHGRGEAVQPEAQGVRRAPQGVRRPPRRPPPALLPAMQPLAAFFLGSWIAR

Nucleotide Sequence
Copy to clipboard
     
Expand

ATTTTTCTAGCCCACTACTTCCTCC...

Zm00001eb322280_T003 from maize genome v5

Amino Acid Sequence
Copy to clipboard

MPDSSSSAGTGGMAPSSSAAASIAALAAAAASGDGSDDSGAANNNGALPLPLPPPHGVEDNNSPAELAGAGGTSRAVARR
VAAAGASPAAAARRGAAVNAQAAGGAGPSCQVERCSADMGVEKRYNRRHKVCDAHRKASVVLLAGLRQRFCQQCSRLQLF
FLGHG

Nucleotide Sequence
Copy to clipboard
     
Expand

ACTACTTCCTCCAATCTCCCACTCA...


Copyright © 2023 Grassius.org | Last updated: 2023-06-26